rs46395927 SNP Detail

Summary

• ID
  rs46395927
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:85007272 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCATACACA TACATAACAC
  ACCTGTGTAC TCGTGTGCAC ATAGCCGAAC ATGCATAAAT AAAAATAAAT CTTTTTAAAA
  AAAAAAAAAG GAACACTAGT CTAAATTTGA CTCAATTTAA TGACCAGTAA GCTCTTTGCA
  ATTCAATCCA GGGATGGATA TTTCAAAATC ATGTGTCTCA AAGAAATTCA GACCTAACCC
  Y
  GACTCTAATT GGAATCTAAT CCTATAAAAA TCACTGTACC TCACTGAAAT TTTAAAATTT
  ATTTTACAGA TTTATTTTGT GTATATGAGT GTTTTGCCTC ATGTTGTGCC TGTGCACTGT
  GTGTATGCCT GATGACTGCA GAGGGCAGAA GGAAGCATCA GACCCACTGG AATAGGAGGA
  GTTACAGACA GTTGTGAGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52450105	NES15421967	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46395927					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52450105	NES15421967	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:85007272 () rs orientation: forward

Symbol	Name	Function Class
Arel1	apoptosis resistant E3 ubiquitin protein ligase 1	within coordinates
Rr469771	regulatory region 469771	1829 bp proximal
Tssr117049	transcription start site region 117049	937 bp upstream