rs46396170 SNP Detail

Summary

• ID
  rs46396170
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:181943486 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G CTTGGAGTCT GGTCTCCTCA GGAAGGGCTG ATTCTGAGCC
  AGTACTTGGC TTGGATCTAC TGCACAGCAC TGCCCTCCGC TGGTCTGAGC CCTTCTGCTG
  K
  GAGGGCCTCC TCAGGTTTCC CTCCCTCCTT CCTTGGGGCA AGAGTGTTCT GGATAAACAG
  GATTTTTTAG TTGGCTTCTC TTAGCAGGTG TGTTTTACCC A                    
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss146402258	ENSMUSSNP4052071	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs46396170					SNP	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:181943486 () rs orientation: forward

Symbol	Name	Function Class
Gm33725	predicted gene, 33725	within coordinates
Rr424860	regulatory region 424860	1881 bp distal
Rr424861	regulatory region 424861	1380 bp distal
Rr424862	regulatory region 424862	129 bp distal
Rr424863	regulatory region 424863	491 bp distal
Rr424864	regulatory region 424864	within coordinates
Rr424865	regulatory region 424865	13 bp distal