rs46396573 SNP Detail

Summary

• ID
  rs46396573
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:125872809 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGATG AGTCTCTTAT TTTCTGACTC
  Y
  GAGACCCCAG CTCAGGTCTC AGTGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145871781	ENSMUSSNP6689567	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss322450388	CHEV_7_133417151	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46396573					SNP	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:125872809 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19689	CpG island 19689	313 bp distal
Rr368426	regulatory region 368426	1736 bp downstream
Rr655453	regulatory region 655453	1008 bp distal
Sbk1	SH3-binding kinase 1	within coordinates
Tssr69002	transcription start site region 69002	1213 bp downstream
Tssr69003	transcription start site region 69003	1194 bp downstream
Tssr69004	transcription start site region 69004	1182 bp downstream
Tssr69005	transcription start site region 69005	1163 bp downstream
Tssr69006	transcription start site region 69006	1145 bp downstream
Tssr69007	transcription start site region 69007	1113 bp downstream
Tssr69008	transcription start site region 69008	1050 bp downstream
Tssr69009	transcription start site region 69009	1028 bp downstream
Tssr69010	transcription start site region 69010	842 bp downstream
Tssr69011	transcription start site region 69011	779 bp downstream