rs46396602 SNP Detail

Summary

• ID
  rs46396602
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:118405924 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCAC CAGCTGCAAT GCTCAGGAAA
  G
  TGGGCCCTGC ATCTCCCCTG GGTAG                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss149162351	ENSMUSSNP4489880	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss321662380	CHEV_5_118717868	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs46396602					SNP	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:118405924 () rs orientation: forward

Symbol	Name	Function Class
Gm25076	predicted gene, 25076	1279 bp downstream
Gm73266	predicted gene, 73266	1384 bp upstream
Rr618847	regulatory region 618847	1346 bp distal
Rr618848	regulatory region 618848	966 bp proximal
Rr618849	regulatory region 618849	1335 bp proximal
Rr618850	regulatory region 618850	1406 bp proximal