rs46397313 SNP Detail

Summary

• ID
  rs46397313
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:88187040 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G GCGGGTGAGA CACGTGTCCA GGTTCAGGGG GGATCTTGAA
  GCCACATAGT TAATCCTGGG TTTGGATGGG GGAGTCAAAG CAGCTGAGGT GGGAGGAGGG
  C
  GAGCCCTAGT CTAGCTTGCA ACACTAGGTC TGCCAGTCCT GTTTCATGCT CCCCTGATCT
  TGCACACTGC CAACTTCAGC CAGATAAGAC ACTTGACTGA T                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss144898838	ENSMUSSNP1326893	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs46397313					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:88187040 () rs orientation: forward

Symbol	Name	Function Class
Mroh2a	maestro heat-like repeat family member 2A	within coordinates
Rr18061	regulatory region 18061	40 bp distal
Rr35066	regulatory region 35066	within coordinates
Tssr7958	transcription start site region 7958	193 bp downstream
Tssr7959	transcription start site region 7959	173 bp downstream
Tssr7960	transcription start site region 7960	150 bp downstream
Tssr7961	transcription start site region 7961	121 bp downstream
Tssr7962	transcription start site region 7962	30 bp upstream
Tssr7963	transcription start site region 7963	58 bp upstream
Tssr7964	transcription start site region 7964	73 bp upstream
Tssr7965	transcription start site region 7965	109 bp upstream