rs46397988 SNP Detail

Summary

• ID
  rs46397988
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:103252098 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCACCCCCT CTGCCTGTCA
  TGAATTCACT CAGTGGAAGA AAACTAAGTT CTACAAGTTG TCTTCTGATC TCCATTTTCA
  TGTTGTGGCA TGTGGCCTCT CACACACACA AAATGTGCAA ACAACACCTA GTGGGCTTTC
  CTTTCACTTT ATTTTTCCTG ATTTAAGGGA AGCCCAGGTG AGTGTGTTGT GCCATCTTTC
  Y
  TCACCTTTCA CAGGGACCTC TCTACATCTT TCATAATTCT CAATCACAAA GAGAAGAGAT
  TTCTCTTTTC TCCTTTGTGG TAGGTAAGCC CCCTAGTGGG AGCTGGATGA GGAACAACAA
  AGGAGTCAAC CCCCTCCCAC CCCCTTTCTC TGTTTTTTCA AGACAAGATT TCAGTGTAGC
  CTTGGTTATC CTGGAATGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52584133	NES15645652	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46397988					SNP	C	C	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52584133	NES15645652	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:103252098 () rs orientation: forward

Symbol	Name	Function Class
Itga5	integrin alpha 5 (fibronectin receptor alpha)	615 bp downstream
Rr404654	regulatory region 404654	902 bp downstream
Rr510619	regulatory region 510619	1587 bp distal
Rr510620	regulatory region 510620	637 bp distal
Rr510621	regulatory region 510621	1049 bp distal
Rr510622	regulatory region 510622	62 bp distal
Tssr136772	transcription start site region 136772	887 bp downstream
Tssr136773	transcription start site region 136773	967 bp downstream
Tssr136774	transcription start site region 136774	1041 bp downstream
Tssr136775	transcription start site region 136775	1059 bp downstream
Tssr136776	transcription start site region 136776	1103 bp downstream
Tssr136777	transcription start site region 136777	1135 bp downstream