rs46398192 SNP Detail

Summary

• ID
  rs46398192
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:6570358 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGAAGATAT CTTCAAGTTG
  TGATTATTTA CTGTTTTCAT TGTTAAAAAT CTACATTTAA CTACATGGCA ATGAATAGTG
  TGTCCATAGG GGTCTGTAAT GAACATTTCT GCTTGGCAAT GTGCAGTTTG CTGTTCTGAA
  AATACATTTA GAAGCACTCA ACCCACAATG GAGAAACAGG AGAGATGCTG GATAAAAGCC
  R
  GGACTCCTAG GAACTAGAAG CCAATGGAGA AGCCTTGCCT CCATCACCAG CCCTTAGCTT
  TCCCGTGCCG AGGAACTCTT CCTCCTTTTT TGCCTTGCTG GCAACCGGAC TGAGTCACTC
  TCCATCATTA AACCTGATCG TTAAACCTGA TCGTACACAG TCCATTCTTC AAGTTCCATG
  ACTAGTTCCT GGAAACAATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62615392	NES17311458	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46398192					SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62615392	NES17311458	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:6570358 () rs orientation: forward

Symbol	Name	Function Class
Fyb1	FYN binding protein 1	within coordinates
Gm62041	predicted gene, 62041	1724 bp downstream
Gm62055	predicted gene, 62055	within coordinates
Tssr130496	transcription start site region 130496	607 bp downstream
Tssr130497	transcription start site region 130497	565 bp downstream
Tssr130498	transcription start site region 130498	548 bp downstream
Tssr130499	transcription start site region 130499	524 bp downstream