rs46398543 SNP Detail

Summary

• ID
  rs46398543
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:74860293 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCGG CGTCTCGGCG GCCGCGGGGT
  M
  GATGCGCGCT GCGCTCGGGG AGGCG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss136638898	ENSMUSSNP5059871	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss323007476	CHEV_9_74800818	CHEVERUD	SCREENING_POP	f	SNP		A	C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs46398543					SNP	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:74860293 () rs orientation: forward

Symbol	Name	Function Class
Atosa	atos homolog A	within coordinates
Cpgi22037	CpG island 22037	within coordinates
Gm68252	predicted gene, 68252	194 bp upstream
Rr401515	regulatory region 401515	874 bp downstream
Rr401516	regulatory region 401516	within coordinates
Rr683033	regulatory region 683033	1189 bp distal
Rr683034	regulatory region 683034	1275 bp distal
Rr683035	regulatory region 683035	205 bp distal
Rr683036	regulatory region 683036	within coordinates
Rr683037	regulatory region 683037	87 bp proximal
Tssr86114	transcription start site region 86114	76 bp downstream
Tssr86115	transcription start site region 86115	63 bp upstream
Tssr86116	transcription start site region 86116	145 bp upstream
Tssr86117	transcription start site region 86117	550 bp upstream