rs46398543 SNP Detail

Summary

• ID
  rs46398543
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:74860293 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCGG CGTCTCGGCG GCCGCGGGGT
  M
  GATGCGCGCT GCGCTCGGGG AGGCG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss136638898	ENSMUSSNP5059871	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss323007476	CHEV_9_74800818	CHEVERUD	SCREENING_POP	f	SNP		A	C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs46398543					SNP	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:74860293 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Atosa	atos homolog A			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
				Splice-Site
Gm68252	predicted gene, 68252			194 bp upstream
Rr401515	regulatory region 401515			874 bp downstream
Rr401516	regulatory region 401516			within coordinates
Rr683033	regulatory region 683033			1189 bp distal
Rr683034	regulatory region 683034			1275 bp distal
Rr683035	regulatory region 683035			205 bp distal
Rr683036	regulatory region 683036			within coordinates
Rr683037	regulatory region 683037			87 bp proximal
Tssr86114	transcription start site region 86114			76 bp downstream
Tssr86115	transcription start site region 86115			63 bp upstream
Tssr86116	transcription start site region 86116			145 bp upstream
Tssr86117	transcription start site region 86117			550 bp upstream