rs46398845 SNP Detail

Summary

• ID
  rs46398845
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:21424791 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCAG GTTTGTAACT TTAGTTGACT
  R
  CAGATTATAT TGTTTGTGTC GCCTA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52314523	NES15371726	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	G	G	G	G	G	G	G	G	G	G	G
ss137298223	ENSMUSSNP225498	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46398845					SNP	G	G	A	A	A	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52314523	NES15371726	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:21424791 () rs orientation: forward

Symbol	Name	Function Class
Adam17	a disintegrin and metallopeptidase domain 17	1158 bp upstream
Cpgi4477	CpG island 4477	583 bp distal
Gm49586	predicted gene, 49586	444 bp downstream
Rr463712	regulatory region 463712	1351 bp distal
Rr463713	regulatory region 463713	1107 bp distal
Rr463714	regulatory region 463714	1226 bp distal
Rr463715	regulatory region 463715	66 bp distal
Rr463716	regulatory region 463716	1046 bp distal
Rr463717	regulatory region 463717	558 bp distal
Tssr112932	transcription start site region 112932	1011 bp downstream
Tssr112933	transcription start site region 112933	533 bp downstream
Tssr115856	transcription start site region 115856	1298 bp upstream
Tssr115857	transcription start site region 115857	1272 bp upstream
Tssr115858	transcription start site region 115858	1244 bp upstream
Tssr115859	transcription start site region 115859	1198 bp upstream
Tssr115860	transcription start site region 115860	1173 bp upstream