rs46401020 SNP Detail

Summary

• ID
  rs46401020
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129568421 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATGG CTCAGTGGGT AAGAGCACCC
  R
  ACTGCTCTTC CAAAGGTCTG GAGTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147445921	ENSMUSSNP4084438	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss321314556	CHEV_4_129351872	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46401020					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129568421 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14905	CpG island 14905	1527 bp distal
Kpna6	karyopherin subunit alpha 6	1861 bp upstream
Rr85538	regulatory region 85538	within coordinates
Rr85539	regulatory region 85539	1180 bp proximal
Rr100093	regulatory region 100093	1020 bp distal
Tmem39b	transmembrane protein 39b	1727 bp downstream
Tssr43552	transcription start site region 43552	1920 bp upstream
Tssr43553	transcription start site region 43553	1854 bp upstream
Tssr43554	transcription start site region 43554	1835 bp upstream