rs46401292 SNP Detail

Summary

• ID
  rs46401292
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:11019654 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGCCTAAC AACCAGAGCT
  CAAGCTCCAG GACCAACATG GTAGGGAGAA ATGGCACTGA CTGCCACATG CGTGCACCCA
  ATACTCCAGA CAGACAGACA AACACAAATA AATGCTCTTT AAAAATATTT TTAGTTATTT
  GTTTTCATGT CATTGTTTCT CTGTCTTAGA ATACGCTCTG AAGATAGGGC TGGCCTCGAA
  Y
  TCAAGAGATC TGCCTGCCTC TGCCACTTCT GGCTCTAAAA GAGAAAATAT TGGGCTAGAG
  AGACCAAATG CAGGATTGTA CACACTCAGC AGTTAAGAGC ACTTGCTGCT TTCCCAGGAG
  ATCTGATTTC TGTCACCTGT ACCAACACTG GGCTGCTCAC AACCTCTTAT CTCTGCAGTC
  TAGGTGGTCT GACATCCTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52593836	NES15688312	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46401292					SNP	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52593836	NES15688312	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:11019654 () rs orientation: forward

Symbol	Name	Function Class
2610020C07Rik	RIKEN cDNA 2610020C07 gene	1593 bp upstream
Cpgi7962	CpG island 7962	1015 bp proximal
Gm60496	predicted gene, 60496	1553 bp downstream
Rr404684	regulatory region 404684	1428 bp upstream
Rr511715	regulatory region 511715	389 bp proximal
Rr511716	regulatory region 511716	753 bp proximal
Rr511717	regulatory region 511717	1531 bp proximal
Rr511718	regulatory region 511718	1611 bp proximal
Rsl1d1	ribosomal L1 domain containing 1	within coordinates
Tssr137080	transcription start site region 137080	1585 bp upstream
Tssr140007	transcription start site region 140007	1406 bp upstream
Tssr140008	transcription start site region 140008	1469 bp downstream