rs46402778 SNP Detail

Summary

• ID
  rs46402778
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:83173977 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACAGCTCC ACATGCTTTG
  AGGGGAATCT CTTGATTCAC CATTTTGTGC TGTTTTAGTA AGGCTCTTAA ACAAATTCTG
  CTTCTGGATT AGTGAAACAC CCCATCAAAC AAGGGAGGCG CTTACCTCAG AGCAGGGTAT
  CCTGAGGAGC AAGGCAGTAC TTGCCCCTTC TTGCCAGGCT CTCCAGCCGG AGCATTCGGT
  R
  CAGAGATACA CGCAGCCTCT GGAGTGGTTC CCATGCCTTT CCTGGAGATG AAACGGGAGG
  CAGGAGCAGC CTCACCCCGT GCTTCCTGTG TTCACTGACT CTGTCATTCT CTCAGAGTGT
  GCTGGGCCTC ACGGCCTCAC CCACTGTTGC TCTCCTTCAC ATGTCTGCTC AACCCCCCAA
  AGTCAGAGGT GGGGTTTTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60903723	NES15949711	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46402778					SNP	G	G	G	G	G	G	G	G	G	A	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60903723	NES15949711	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83173977 () rs orientation: forward

Symbol	Name	Function Class
Dctn1	dynactin 1	within coordinates
Tssr57329	transcription start site region 57329	1170 bp downstream
Tssr57330	transcription start site region 57330	1146 bp downstream
Tssr57331	transcription start site region 57331	1114 bp downstream
Tssr57332	transcription start site region 57332	1038 bp downstream
Tssr57333	transcription start site region 57333	1018 bp downstream
Tssr57334	transcription start site region 57334	979 bp downstream
Tssr57335	transcription start site region 57335	961 bp downstream