rs46403118 SNP Detail

Summary

• ID
  rs46403118
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:152666465 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCTGAATT GCCTTTGACA
  AACTGACCTA TTAAGGAAAA CAGCATAGCG TGACTGGGTG CAGTGCTTTG GGAGTGGTCT
  TCTCCGTCTC GCTCGCTTTC ACAGAGCGCC AGCTTTGCAA GCTGACAGGT CCCAGCCATA
  TTTAAGGTCA CAAACCTTGA ACAAGTTACA GACTCCAAGG CTCGTTGGGG AAAGCTCTTT
  R
  GTTATCAGCG TTGTTGTTGT TGTTGTTGTT GTTGTTGTTG TTGTTGTTGT TGTTAGAAAC
  AATGAACTGA TGCCCACAAA GTACATTAAG CCTTCGGAGA GGAACTGGTA TTGGGAGAGT
  TCGCACCAGC TTCCTGCTGC CCCGAAGGAA TTCTAAACCT CTGCCCTATT ACATCCCTAG
  CTGGCCCCTC CCTCATCTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	MSM/Ms
ss145735344	ENSMUSSNP1623661	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J	MSM/Ms
rs46403118					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152666465 () rs orientation: forward

Symbol	Name	Function Class
Rr420541	regulatory region 420541	within coordinates
Rr420542	regulatory region 420542	357 bp distal
Rr420543	regulatory region 420543	233 bp distal
Tssr9422	transcription start site region 9422	1181 bp upstream