rs46404212 SNP Detail

Summary

• ID
  rs46404212
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:64302024 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCGCG GTGGGACGCA TGAGCAACCA
  C
  TCGCACAGTA GTCAGCTCCC GGTCG                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss149161855	ENSMUSSNP5877863	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss324379429	CHEV_13_64255518	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46404212					SNP	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:64302024 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5773	CpG island 5773	543 bp distal
Cpgi5774	CpG island 5774	within coordinates
Gm47513	predicted gene, 47513	within coordinates
Gm61554	predicted gene, 61554	within coordinates
Gm61557	predicted gene, 61557	1785 bp downstream
Rr273318	regulatory region 273318	977 bp proximal
Rr281559	regulatory region 281559	within coordinates
Rr403820	regulatory region 403820	1731 bp downstream
Rr403821	regulatory region 403821	573 bp downstream
Tssr120196	transcription start site region 120196	490 bp downstream
Tssr123017	transcription start site region 123017	1755 bp upstream
Tssr123018	transcription start site region 123018	1462 bp upstream
Tssr123019	transcription start site region 123019	1065 bp upstream
Tssr123020	transcription start site region 123020	1021 bp upstream
Tssr123021	transcription start site region 123021	1003 bp upstream
Tssr123022	transcription start site region 123022	933 bp upstream
Zfp367	zinc finger protein 367	1011 bp upstream