rs46406221 SNP Detail

Summary

• ID
  rs46406221
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:56593007 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C TGCAATCCGT CTTCTTGGGT TTAGGTTCCC TTCCAAAGGC
  CGTGTCTAAG GGTGTGGACC ACAATCTAAA CTCTGCTTAG TAGTCGAGGG GCCAGACCCA
  G
  ATGACAGCCC CAGTGTGCCT TTTGCTCTGG GTTCGGTGGG ATCCAGAGGG CATTCTTGAC
  TGAATGTGGC CAACCTTAAA GACCTTCTTG CCCAGTAGAG G                    
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss145807160	ENSMUSSNP2791635	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	A/J
rs46406221					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:56593007 () rs orientation: forward

Symbol	Name	Function Class
Plin3	perilipin 3	within coordinates
Rr529026	regulatory region 529026	1234 bp proximal
Tssr148779	transcription start site region 148779	1856 bp downstream
Tssr148780	transcription start site region 148780	1873 bp downstream
Tssr148781	transcription start site region 148781	1918 bp downstream
Tssr148782	transcription start site region 148782	1950 bp downstream