rs46406702 SNP Detail

Summary

• ID
  rs46406702
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:183848868 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATAAAATG GTGTTATAAT
  TTAGAATAGT GTCCAGTAAA GCTATTAGTA ATTGCTGCTT GGTAAACCTG CAAGATAAGT
  GGGCAGGATG CAGTGGTTAC ACAGACTCTG AATTTGAAAA TGCTGCTGTT TTCACTCATA
  AGACAATCTA AATGGTAGAC ACTGGGCTTT TAGTTTCTGC GGGAAGCTCT TAGAACCACC
  R
  GAAGGGAAAT CTAATTGTGT TAAGTGTCTT TTGGATGCTC ACTCCAACTA TCCTGGCTGT
  CTTCTTGATG GACTGTGTGC CACTTTGGCA CTGGGCTTTG GGGAGGCATC TCCTGGCTAG
  CTCAGCGCCT GCTCCAGACT AACTCTTTAC CTCTTCATCC ACTCTCCCTC AAGGCCTGAA
  ATCTCCACTT GTTTGTGGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60352426	NES15852844	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46406702					SNP	A	A	A	A	G	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60352426	NES15852844	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:183848868 () rs orientation: forward

Symbol	Name	Function Class
Gm69596	predicted gene, 69596	1603 bp upstream
Rr425179	regulatory region 425179	1352 bp proximal
Rr425180	regulatory region 425180	1614 bp proximal
Tssr10581	transcription start site region 10581	1601 bp upstream