rs46407250 SNP Detail

Summary

• ID
  rs46407250
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:32629693 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAAACTAC CTCTTCCAGC
  CTAAATAAAC CGGCTTTGCT CCATTTGTTT GCCCAGATTT TTCCTTTGCC CATGGAGAAA
  ACGTTTCATC TTCTACCTCT CCTGGCTTCG CTTTCCTGGG GGAGGGGATC CCTAGCCCCC
  CTTCTTCATG CTTGCTGTAG GCTCTGAGCC AGTAGTGGGA GCAGGTCACT TTTGGGGAGG
  S
  CGTGCAGTGG TGCGGTGACA TGGGGGAACC TGGAGCCACA TGCTGCAGCT GCTGTGTACT
  ATCTCTGGGA CCAAGATCTA CTTTTCTCCA GAAAGAACTT CCTTCACAAT TACATTTGGA
  AAGAAACATC CTACATCCAT GTCTGTTTAC AAACAGACCC AGAGGGGGAA TACCTACCTT
  TTGTGTCCAG ATCTCTGGAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136250200	ENSMUSSNP1607645	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46407250					SNP	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:32629693 () rs orientation: forward

Symbol	Name	Function Class
Ets1	E26 avian leukemia oncogene 1, 5' domain	within coordinates
Rr368708	regulatory region 368708	949 bp downstream
Rr676236	regulatory region 676236	1865 bp distal
Rr676237	regulatory region 676237	within coordinates
Rr676238	regulatory region 676238	1239 bp proximal
Tssr84287	transcription start site region 84287	1636 bp downstream
Tssr88694	transcription start site region 88694	284 bp upstream