rs46408002 SNP Detail

Summary

• ID
  rs46408002
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:63284275 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGTTCAGA TAGATCCATT
  GCAATCCAAG TAGGTAAACG TTTAAAATAT CTGGACCCAT TTCCCTTTTC TTTGTCCAAA
  ATAGTTCTCT CTTCTGTACC TTTAGTTTTA TGTCCATAAA CCCAGATGAA TGCCTTTCTC
  TAAAAGAAAA GAAGGTGAAA TAGGCTGATC TGACTGGAGG AAGTCTCACA AGACACACAT
  K
  AATCCACTGG TATGGAAGAG TCTTGTGTCT GGAGATGCTT CCTGCTTCCC TGAGGAGTGC
  TCCTAATTTT CATTTCAGGG AAGGAAAACA GAGACCCCAA GGGTTAAGCC CAGGCCTGAG
  ATGATGCATT AGAACGAACC TACAGCAGAC CCACTAGTTC TTCAGCAATT ATGATATGTG
  TCCTCTAGGG TCCTGGGCAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61818464	NES17756630	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46408002					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61818464	NES17756630	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:63284275 () rs orientation: forward

Symbol	Name	Function Class
Aopep	aminopeptidase O	within coordinates
Gm30409	predicted gene, 30409	1948 bp downstream
Rr273239	regulatory region 273239	326 bp proximal
Rr276922	regulatory region 276922	1274 bp distal
Rr276923	regulatory region 276923	875 bp distal
Rr276924	regulatory region 276924	1726 bp proximal
Rr284651	regulatory region 284651	410 bp proximal