rs46408660 SNP Detail

Summary

• ID
  rs46408660
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:64440915 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTCAAAAC TGATAGCAAT
  TTCAGGAATT GGAAATACAA GTGAGGGATT GAATTACCTA AAAAGCATTC AAATGGGTCC
  AATACAAGTA TGCTTCACAA ACTATTTTAG AGCTGGAATA ATACACAAAT GGAATAGGAA
  ACCAAACAGT ATGATGTTGA TTCTGATTAT GACGGTAAAT TTCCTTTTCA TCTTAACAAG
  R
  TGTTTTATAG TTTTCAGTTT CTTATGCATG CAATAGACTA GGATAGCAGT TCTTTGGTGC
  CTATGGCATA AATGTATACC ATGCTCATAA AGAACTATCT TCAATAAAGC TGAGAGAGTA
  ATGTTATGTA AAACAACCAA AGCCATAAGC AGAACATATG TCCTTGTGTA CCTTCTTTCT
  CAGCAAAAGT GGATATACTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss133262259	ENSMUSSNP5420672	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs46408660					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:64440915 () rs orientation: forward

Symbol	Name	Function Class
D6Rck360	DNA segment, Chr 6, Rockefeller University 360	1882 bp proximal
Grid2	glutamate receptor, ionotropic, delta 2	Intron
Rr379493	regulatory region 379493	310 bp upstream