rs46408997 SNP Detail

Summary

• ID
  rs46408997
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:98438554 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCTGCTTA CCACTCGCAT
  TTCTTCTTGA CAGTTTAGAT TAAAAGAAAA AACAAAGAGC CATGCTTACA CGGCTGACTT
  TAGATATACA ACTACTACTT CTCACCCCTT GAAAGTATGA AGGTAGGAGA CACACATGGC
  TTAGAAGCCA TATTTATACA GAAACTGGAC AATATGCATG CTAGCTGGCA GGTATATCTG
  S
  TACGCCAAAA TAATGCAATG CAGAAGTTCA TGCAGAGCCC ACGAGGGAGT TCAGGACCTA
  CGCACTGACT TAGAAGCAGA CACTGCATCT ATCTATAGAC AGTACCAGAA GGAACTAATA
  TAGTAAGGTC TCAACTAATC AAACTCAGTG TTGAGCTACA GTAGAAGACC AGACTACAGC
  ATGAAGTAGC TCTTTAGAAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss63626000	NES17036605	PERLEGEN	MM_PANEL2	f	SNP	C	G	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs46408997					SNP	C	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63626000	NES17036605	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:98438554 () rs orientation: forward

Symbol	Name	Function Class
Ccnt1	cyclin T1	within coordinates
Tssr132942	transcription start site region 132942	711 bp upstream
Tssr136244	transcription start site region 136244	1948 bp downstream