rs46409337 SNP Detail

Summary

• ID
  rs46409337
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:38937788 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACAC TCCATTCTAC AGAATGAATT
  A
  AATTACCTGT TTTCTCAACT TAAAT                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss134846105	ENSMUSSNP2633449	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss320724080	CHEV_3_38782561	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46409337					SNP	A	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:38937788 () rs orientation: forward

Symbol	Name	Function Class
C230034O21Rik	RIKEN cDNA C230034O21 gene	within coordinates
Cpgi13105	CpG island 13105	1343 bp proximal
Gm65329	predicted gene, 65329	1027 bp downstream
Rr575715	regulatory region 575715	322 bp distal
Rr575716	regulatory region 575716	614 bp distal
Rr575717	regulatory region 575717	within coordinates
Rr575718	regulatory region 575718	834 bp proximal
Rr575719	regulatory region 575719	1897 bp proximal
Tssr28930	transcription start site region 28930	1673 bp upstream