rs46410382 SNP Detail

Summary

• ID
  rs46410382
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:71064581 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTCCCCCG CAAGACCGAG
  CCCTGTCGCC CAGCAGTACC CCATTCCACC CGACCTCGGA TCTTCAGCTC AGCGCCAAGC
  ACAGGGCTTA ATTCATCTTT TGCTGATTCC TACCCAGCGT TGGTACAACT GCATAGAGTA
  GAGCAGTGTC AAAGTGACAA AGCAACCTGC CTGGGGTTGC ACAGCAGAAC CAAACACCGG
  K
  TCCTCATTTG GGGTGTGCTG GTAATGCATG CTAGTCTCAC AAACTCTCAT TTCGTGAAGA
  GAACCCAATA AGTATTTGCT GAGCAGATGA ATCTGCATCC CATTCTCTCC TGACCCTCAA
  AACAGCCATG GGCTGTAGTT CCAGATGTGG CCACGAGATA GCAGCAGAGG ACGATGGTGA
  CCGCGGCAGC CACATTCAGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60632747	NES16282163	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46410382					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60632747	NES16282163	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:71064581 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20476	CpG island 20476	1447 bp distal
Cpgi20477	CpG island 20477	51 bp distal
Gm45546	predicted gene 45546	within coordinates
Gm63790	predicted gene, 63790	1075 bp downstream
Rr400904	regulatory region 400904	786 bp downstream
Rr400905	regulatory region 400905	within coordinates
Rr664836	regulatory region 664836	1528 bp distal
Rr664837	regulatory region 664837	within coordinates
Rr664838	regulatory region 664838	981 bp distal
Rr664839	regulatory region 664839	301 bp distal
Rr664840	regulatory region 664840	208 bp proximal
Tssr77777	transcription start site region 77777	1519 bp downstream
Tssr77778	transcription start site region 77778	1213 bp downstream