rs46411514 SNP Detail

Summary

• ID
  rs46411514
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:140427589 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTCTGCAA GAGGAGTTCC
  CTGGAGAGTG TGGGAGCTCC TTGGAGACTT GGGGACTCCC TGAAGAGGTG GGAGTTCCTG
  GAGACTCGTG TGGTTGCTGG AGATGTGCAT AGCCCCTAAA GGAGAAGTCC ACGGAGAGGA
  TGGGGGCTCC CTGGAGAGGG TTAGTTCCCC CCAAAAACAG GATCTCTGGA AAAGGTAATG
  W
  CTGAAGAGAG GCCTTGGGCC AGAGGTCATT GTCTCCATCA CACACACTAT GATCTAGAAC
  TTCTTGTGGG ACAAAGCCAC ATTCTAGAGC TCAGGGGCAG GGACCCCTCC CCAGTTCTCA
  AAACTGGGGG AGAAAGAGAA AGCTTCCCTT TCTCCCCATG TTCCTTTTTA GGGAGTTGCC
  TGGCACAGAC ACCAGGGGGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61072225	NES16047757	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46411514					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61072225	NES16047757	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:140427589 () rs orientation: forward

Symbol	Name	Function Class
C330022C24Rik	RIKEN cDNA C330022C24 gene	1987 bp upstream
Cimap1a	ciliary microtubule associated protein 1A	240 bp upstream
Gm45785	predicted gene 45785	Intron
Rr657757	regulatory region 657757	1897 bp distal
Rr657758	regulatory region 657758	1723 bp distal
Rr657759	regulatory region 657759	239 bp proximal
Rr657760	regulatory region 657760	1703 bp proximal
Scgb1c1	secretoglobin, family 1C, member 1	907 bp downstream
Tssr69848	transcription start site region 69848	78 bp upstream
Tssr69849	transcription start site region 69849	94 bp upstream
Tssr69850	transcription start site region 69850	108 bp upstream
Tssr69851	transcription start site region 69851	125 bp upstream
Tssr69852	transcription start site region 69852	140 bp upstream
Tssr69853	transcription start site region 69853	167 bp upstream