rs46411760 SNP Detail

Summary

• ID
  rs46411760
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:149212842 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCAGTCCA TGACCATAAA
  ACCTGTTAGA AAGCCTTTTC TGCCTACGAG GGCTATGGTT CCTACAGTGT AAGGAACAAG
  ATAAAGAAAT GATACCATGG ATGAATGTAG CCATGGAAAC CAAGCCTAGA GTGTGTGCAT
  GAGTATGATA AAGTTGAAGT AAGGTGAACT TCCAATGGAG TAATGTGTGA ATGCTTTAAT
  Y
  ATTATTGGTT AAGTGTAGCT TAAATACTCC TGTCTGGCCA CCGCAACTCA CTCTAGGTTT
  GGTTTCCATG GTTACATTCA TCCATTGTAT TGTTTCCTTA TCTTGTTCCT TACATACAGT
  TATGTTACTT GGATTCAGGT CTTGCTTGAC CCCTCCAACT TGGGTCTACC ACTTACTGTA
  AAATCTCAGA AGAATTTTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss60961286	NES16169753	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs46411760					SNP	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60961286	NES16169753	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:149212842 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18192	CpG island 18192	1471 bp distal
Gm56997	predicted gene, 56997	1669 bp upstream
Resf1	retroelement silencing factor 1	within coordinates
Rr380294	regulatory region 380294	1292 bp downstream
Rr380295	regulatory region 380295	146 bp upstream
Rr641719	regulatory region 641719	1860 bp distal
Rr641721	regulatory region 641721	1953 bp distal
Rr641722	regulatory region 641722	1680 bp distal
Rr641723	regulatory region 641723	1179 bp distal
Rr641724	regulatory region 641724	within coordinates
Tssr59651	transcription start site region 59651	1906 bp downstream
Tssr59652	transcription start site region 59652	1862 bp downstream
Tssr59653	transcription start site region 59653	1786 bp downstream
Tssr59654	transcription start site region 59654	1589 bp downstream
Tssr59655	transcription start site region 59655	1520 bp downstream
Tssr59656	transcription start site region 59656	1009 bp downstream
Tssr64179	transcription start site region 64179	1694 bp upstream
Tssr64180	transcription start site region 64180	1659 bp upstream