rs46412602 SNP Detail

Summary

• ID
  rs46412602
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:110434508 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAGCCGGT GAGAGCCGGT
  GTCCTGCTGC CAAGGCGCTG GCGGTAGCCG CGGCCGGAGC AAGCTTGGGC GGGCGCGGTG
  TCCGGGGGTT CAGGGGTGGG GAAAACAGCG GGCCCGGCGC GCGGCGCGGA GGACAGGGCG
  GGCTCCCGTC TTCGCCCTGT GTGGTTTCCG TAGTTTTTAT TGAGATGCTA AACTCAACTC
  Y
  GTGGCCCAGG CTGCTTCTCT AGAAATATCT GTGCCTGCCC TGTGACTTGA CTAGGGGTGA
  ACATCTATTC TCATCAGACA AGAAGGGAAC GGGGAAAGTA AAGGAAGATT CTGTCTAGAC
  CAGCTCGGCG AAGTAAACCA ATTTATTAAA CCAAAAGCCG AAACCCTTAC GCATCACATC
  AGCAAGAGAT TCTAGAGTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61218620	NES16716937	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46412602					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61218620	NES16716937	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:110434508 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16226	CpG island 16226	within coordinates
Pole	polymerase (DNA directed), epsilon	within coordinates
Pxmp2	peroxisomal membrane protein 2	472 bp upstream
Rr399252	regulatory region 399252	1834 bp downstream
Rr616864	regulatory region 616864	467 bp distal
Rr616865	regulatory region 616865	291 bp distal
Rr616866	regulatory region 616866	within coordinates
Tssr47885	transcription start site region 47885	251 bp downstream
Tssr52499	transcription start site region 52499	614 bp upstream
Tssr52500	transcription start site region 52500	590 bp upstream
Tssr52501	transcription start site region 52501	487 bp upstream
Tssr52502	transcription start site region 52502	465 bp upstream