rs46412618 SNP Detail

Summary

• ID
  rs46412618
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:90491696 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGGTTCAT CCATCTTCAG
  TCTCCATCAT GGCCCTCTGG GGACTTTGCT CAGTTCCTTT TCTGGGTCCC AGTGGCGAGC
  TGTTTCCTGT GTTCACTCCT CAGGGGTTTG AAGGCTCTGT TTTCCAAGCC TGTCCTCCAA
  GCTCTCATTG TTACTCCTGG GGCTCAGAAG AGAAGTTATT ATTTGCTAGT GTAACCAGTG
  R
  TGTGCTTTCA GGCATAGAGA TAAGAGAGGG ATCCCTGACC CTCTGGCTCC TACCCCCAGT
  GACTCGTGCT GTCACTCAGC AGCCATGAGC ACACTGGTAG GCACCTGGCG TGGGTGAGAT
  CCTGTGCTCA TGAAGAAGTG AATAAGACCT TTTTTACTGA AAGGTGGGAG TGTGTGTGTG
  TGGGAGCTGA CAAAGGCTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60424341	NES15923785	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46412618					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60424341	NES15923785	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90491696 () rs orientation: forward

Symbol	Name	Function Class
Rr854	regulatory region 854	within coordinates
Rr69093	regulatory region 69093	1696 bp distal
Rr69094	regulatory region 69094	296 bp distal
Rr69095	regulatory region 69095	1105 bp proximal
Rr81998	regulatory region 81998	within coordinates
Rr83342	regulatory region 83342	1958 bp distal
Rr367471	regulatory region 367471	888 bp upstream
S100a3	S100 calcium binding protein A3	270 bp upstream