rs46412738 SNP Detail

Summary

• ID
  rs46412738
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:125924601 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCAAACCC ATAGAGGTCC
  ACCTACCTCT GTTTCATGGG TACAGGGATT AAAGGCATGG CCGCCACACC TGGTCATAGA
  ATACACTTTT AATTTAATTT TGCATTTCAT ACTATGCTGA AGACTGAACA GTGGCTTTGA
  GCATATGGAA AGTAGCTTCC CTGATGGTAA GTCCCCAGGT CCCTGTAAAG ACTTTACAGT
  T
  GGTTTCATTT TGTTATGCTA CAAAATGACT TAAACCGACT TTTCTAGGCT GCATGTCCTG
  ACTAGTCTAT GTTGCTATGG TTATTTTATG CCGCTGACGC TCTGGGTCCC TTTGTCTGCG
  TGGAACGAGT CTCTGGGGCA GGTGGGCAAG GTGTTGGCAG GTGACAGACA GACCAACACA
  CAAGATTGTG TAGAATATGA                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145872421	ENSMUSSNP339278	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46412738					SNP	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:125924601 () rs orientation: forward

Symbol	Name	Function Class
D7Csu3	DNA segment, Chr 7, Central Connecticut State University 3	within coordinates
D7Csu4	DNA segment, Chr 7, Central Connecticut State University 4	20 bp distal
Rr153599	regulatory region 153599	1201 bp distal
Rr153600	regulatory region 153600	200 bp proximal
Rr381445	regulatory region 381445	within coordinates
Tssr69016	transcription start site region 69016	1437 bp downstream
Tssr74630	transcription start site region 74630	497 bp upstream
Tssr74631	transcription start site region 74631	1778 bp downstream