rs46413221 SNP Detail

Summary

• ID
  rs46413221
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:13426846 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTACAATAC AGAAAAAATA
  TGAACTCTTA CAAATAAAAC TAGGTAAGTT CAACTCTTTT TTTTTTTTTT TTTTTTCGAG
  ACAGGGTTTC TCTGTGTAGC CCTGGCTGTC CTGGAACTCA CTCTGAAGAC CAGGCTGGCC
  TCAAACTCAG AAATTTACCT GCCTCTGCCT TCCAAGTGCT GGGATTAAAG GTGTGCACCA
  C
  CACTGCCCCG CTCAGGTTCA ACTCTTTTTT TTTATTTTCT GAGACAGTGT TTCTCTGTAT
  AGCCCTGGCT GTCCTGGAAC TCACTTTGTA GACCAGGCTG GCCTCGAACT CAGAAATCCG
  CCTGTCTCTG CCTCCGGAGT GCTGGGATTA AAGGCGTGCA CCACCACACC CGGCCAGATT
  CAACTCTTTT AAGACTTTTT                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss146822577	ENSMUSSNP2072907	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs46413221					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:13426846 () rs orientation: forward

Symbol	Name	Function Class
Adat2	adenosine deaminase, tRNA-specific 2	1805 bp upstream
Cpgi1315	CpG island 1315	1749 bp proximal
Pex3	peroxisomal biogenesis factor 3	within coordinates
Rr368928	regulatory region 368928	1837 bp upstream
Rr427802	regulatory region 427802	1465 bp proximal
Rr427803	regulatory region 427803	1726 bp proximal
Rr427804	regulatory region 427804	1803 bp proximal
Tssr96771	transcription start site region 96771	1753 bp downstream
Tssr96772	transcription start site region 96772	1897 bp downstream
Tssr96773	transcription start site region 96773	1961 bp downstream