rs46413706 SNP Detail

Summary

• ID
  rs46413706
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:25113855 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTCATTTT TGAGCCTGTG
  CTGAGATACA TCATGGAGAG AGTGCATAGT GGAGGAAACT GCTCACTTCT CGCATCTAGG
  AAGCAAAGAA GATAGCAAGA ACCATAAACC TAATAGTTCA TTTAAGGGTG TATACGCCAC
  CATGACATAA CTGTTTTCTA CTGAACTCTG TCTCCTAAAG GTTCTTCTGA TCTCCCACAG
  R
  CTGGCTACCC AGCCTTTACC TCATGGGCCT TTGGGAAGCA CTGAAGATCT AAATTATAAC
  AATCTTGGAA CATCAGCACT GAATTTGGTG TCTATTTGAG GGACTTTAAG ACTGCCAAAG
  CAATAGGGAT TGATGAACTT AAATATTGGG TGACATTTGT TGGAGCCAAA GGGACAATGA
  ATAAGGAAGT CTTTTCTAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60980602	NES16142452	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A		G	G	A	G		G
ss322121701	CHEV_7_26199449	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs46413706					SNP	A	A	A	A	A	A	G	A	A	A	G	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60980602	NES16142452	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:25113855 () rs orientation: forward

Symbol	Name	Function Class
4732471J01Rik	RIKEN cDNA 4732471J01 gene	within coordinates
Cxcl17	C-X-C motif chemokine ligand 17	1544 bp upstream
Rr164493	regulatory region 164493	355 bp distal
Rr170193	regulatory region 170193	856 bp distal
Tssr2143	transcription start site region 2143	1628 bp upstream
Tssr2144	transcription start site region 2144	1480 bp upstream
Tssr2145	transcription start site region 2145	1456 bp upstream
Tssr2146	transcription start site region 2146	1443 bp upstream
Tssr2147	transcription start site region 2147	1398 bp upstream
Tssr71243	transcription start site region 71243	1614 bp upstream
Tssr71244	transcription start site region 71244	1589 bp upstream
Tssr71245	transcription start site region 71245	1574 bp upstream
Tssr71246	transcription start site region 71246	1545 bp upstream
Tssr71247	transcription start site region 71247	1517 bp upstream