rs46414017 SNP Detail

Summary

• ID
  rs46414017
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:74538883 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTCTCCAT CCTGACCCGG
  TAACCCAGCC TAGGTCGCAA AAACCTTCAG AACAAGTTCT ATCTGATTTA GATCCACCCA
  CGTCTCCCTC CCTGTCCAAC CTGCAGAATG CCTCCGGCTT GTAGGACTCC TCTCTCCTCG
  CTGGGAGCTA CCTTCAAGAT CAAATAATCC AAACCCAAGT TTGTAGACTA GCGAACGGTA
  Y
  ATCCACAGGA CCGAACTCTA GGGAATATCC TTGCGACCTA GGTGCACACA AGGAATGCCA
  AAGCTGCGTT TCCAGGGCCC TTGCTTGTGA CGTCACACCA TGCGAGACTA CATTTCCCAC
  AAGTCTGTGA GAGGAAATTT TAGAAACTCA TGAAAGGATT TGAGTATTTC CTGGTTTTTT
  AGCTCTGCTT TCTGAGATTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61846748	NES17778641	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46414017					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61846748	NES17778641	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:74538883 () rs orientation: forward

Symbol	Name	Function Class
Rr403841	regulatory region 403841	within coordinates
Rr482681	regulatory region 482681	806 bp distal
Rr482682	regulatory region 482682	within coordinates
Rr482683	regulatory region 482683	62 bp proximal
Tssr123220	transcription start site region 123220	16 bp downstream
Zfp72	zinc finger protein 72	within coordinates