rs46414026 SNP Detail

Summary

• ID
  rs46414026
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:188711296 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGTTTGCTG CCAAGCCTCA AAACCCGAGT CTTGAGCCTC
  TGACACACAT GGTAAAAGGT GGGAACTGAC TCCTACAAAG TGGACAGACC TCCGTGGTCA
  K
  CAACGCTTGT TTCTCTTCAC AGGACTCAAG GGTGGTCCCA GCACCCACCT CAGAGGACTC
  ACAACTGCCT GCAATTCCAA CTCCAGGGAA TCTGATGAC                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320190028	CHEV_1_190802978	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs46414026					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:188711296 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Kctd3	potassium channel tetramerisation domain containing 3			Intron
				Noncoding-Transcript-Variant
Rr425733	regulatory region 425733			624 bp distal
Rr425734	regulatory region 425734			890 bp proximal
Rr425735	regulatory region 425735			1143 bp proximal
Tssr15705	transcription start site region 15705			672 bp upstream