rs46414752 SNP Detail

Summary

• ID
  rs46414752
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:33282824 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATAGCAAAA CTTAAGCTGT
  GGCAATTTTG TTGAGAAAAA TCAGACTTTT TATAACCTTA TCAGAAACAG AATGGAATGC
  CAATTGCCAG GATCGATACA GTTGTAGTTG CCAGGATACG ATGAAGTTTG CAGGCTCTCC
  AGGGTTCACA AAATTAATGT CCAAGACCCA TTGTCCTGTC AAATCTCCAT GTTTCCTGGA
  Y
  TACTGAGGGA ACACACAGAG AAACACAAAG CAGCCTGAAT GTTCACAGCC TGAGGGAGGA
  CATTGGTCTG TCCAGAACAG GAAGGCGCAT TGCGCCCAGG AGCCATGGAC TTTAATCTGA
  AAAAAAAACC TACGACAGGA TGCCTCTCAA GGCAGGCAGG CCAAGCCAAC CCGTGGTTCC
  CTGAAACCTT CTTTCTGGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60716601	NES16352463	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46414752					SNP	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60716601	NES16352463	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:33282824 () rs orientation: forward

Symbol	Name	Function Class
Gm70823	predicted gene, 70823	1280 bp upstream