rs46415048 SNP Detail

Summary

• ID
  rs46415048
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:102902179 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAAAC TTATTCGAGG CTATTATTCT
  S
  TTTTCCCAAA GTTGTTTTCC TTCCG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60430278	NES15931048	PERLEGEN	MM_PANEL2	f	SNP	C			C	C	C	G		C	C		G	C	C	G		G
ss135559829	ENSMUSSNP2961435	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G					G
ss320856638	CHEV_3_102798786	CHEVERUD	SCREENING_POP	f	SNP											C					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs46415048					SNP	C	C	G	C	C	C	G	G	C	C	C	G	C	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60430278	NES15931048	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:102902179 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13629	CpG island 13629	681 bp proximal
Rr397897	regulatory region 397897	653 bp upstream
Rr582292	regulatory region 582292	1601 bp distal
Rr582293	regulatory region 582293	355 bp proximal
Sike1	suppressor of IKBKE 1	877 bp upstream
Tssr30945	transcription start site region 30945	846 bp upstream
Tssr30946	transcription start site region 30946	936 bp upstream
Tssr30947	transcription start site region 30947	1260 bp upstream