rs46415609 SNP Detail

Summary

• ID
  rs46415609
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:40244642 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGGCTCAT ATTGAGGAGG
  GGTAGGTAGT GATGGGGCTG TGGGCTCCAC TGGGAACAGT GTGCTGCAAG GTGAGACAGG
  AAAGACTTCA TTCACTGGAA CTAGCATAGT CCATACAGTT TAGAAACAAA CAAGTCTTAC
  AGTGTATATA GAAGAATAAA AACAAATACA GTTCTTTTAA AACACACCAG CAGTGTCATT
  Y
  ATAAGTACTC AGAATGGAGG TTGGCAATAC AACCCCAGAT GTAACAATGT AGGCCTGGCT
  GGTAGAGAAT GAGAATAATG CATTCCAGAT GGAGTAGATT CCAGTAGTTT CCAGGATGGG
  GATAGACATG TATCCCATGC TCTCCACCCC CAGTTTTACG AGGAATATAT GTTACAAAAA
  AGAAACAATT AAAAATGTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52244103	NES15264608	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46415609					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52244103	NES15264608	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:40244642 () rs orientation: forward

Symbol	Name	Function Class
Cdk19	cyclin dependent kinase 19	within coordinates
Rr214650	regulatory region 214650	559 bp proximal
Rr214651	regulatory region 214651	1559 bp proximal
Rr219330	regulatory region 219330	159 bp proximal
Rr222642	regulatory region 222642	1036 bp proximal