rs46415691 SNP Detail

Summary

• ID
  rs46415691
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19194227 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAAATTGTA TTAAAAATTG
  GCAGGGGGAG GGGGTGGGTG CTGGAGAAAT GGCTCAGCAG TTAGGAACAC TGGCTACTCT
  TCCAGAGGAC CTGGGTTCAG TTCCCAGCCC TCCCCACCCC CCACACACAC ATACATGGTG
  GCTCACAACC ATCTGTAACT GCAGGTCTAT GGGACCTGAC ACCCTCTTCT GGCTTCCCCA
  R
  TGACTATGTG CATGTACACA CACACACACA CACACACACA CACACACACA CACACGAGGC
  AGAACACCCA AAAACATAAG TAAACATAAA AGCTATAAAA GTAAAGAAAA GGCCCAAAGT
  GAGAGTAAGT GTGGCAGAGC TCAGATTATT TATTATACTT GAACAATTTA TTAATTTTGG
  GGAGCAGGGC ATGTGTGTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148476762	ENSMUSSNP4543400	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46415691					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19194227 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18489	CpG island 18489	1229 bp distal
Gm23099	predicted gene, 23099	495 bp downstream
Mark4	MAP/microtubule affinity regulating kinase 4	1481 bp upstream
Rr400149	regulatory region 400149	1245 bp downstream
Rr643146	regulatory region 643146	1492 bp distal
Rr643147	regulatory region 643147	991 bp distal
Rr643148	regulatory region 643148	1230 bp proximal
Rr643149	regulatory region 643149	1362 bp proximal
Tssr64858	transcription start site region 64858	1367 bp downstream
Tssr70918	transcription start site region 70918	1617 bp upstream
Tssr70919	transcription start site region 70919	1563 bp upstream
Tssr70920	transcription start site region 70920	1526 bp upstream
Tssr70921	transcription start site region 70921	1502 bp upstream
Tssr70922	transcription start site region 70922	1446 bp upstream
Tssr70923	transcription start site region 70923	1049 bp upstream