rs46416360 SNP Detail

Summary

• ID
  rs46416360
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165592787 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTCAGTACC CATCTTGACA GCTTGCACGC ACATGTGATC
  CTACACTGGC TCAACGGCTT GCACACACTT GCACACACGT GTGATCTTGC ACTGGCCAGG
  Y
  GGCTAGCTCC CTGGCCTGCC AGCCAAGCGG AGTCAGTGAG CTTCAGACCG CAGGGAGAGA
  GAGCCTGGCT CAAAAAGCCA GTTGGATGGC TCCAGCTTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss146006577	ENSMUSSNP684013	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs46416360					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165592787 () rs orientation: forward

Symbol	Name	Function Class
Cpgi955	CpG island 955	882 bp distal
Creg1	cellular repressor of E1A-stimulated genes 1	within coordinates
Gm70530	predicted gene, 70530	within coordinates
Rr28876	regulatory region 28876	within coordinates
Rr396502	regulatory region 396502	1379 bp downstream
Tssr9817	transcription start site region 9817	1434 bp downstream
Tssr9818	transcription start site region 9818	628 bp upstream
Tssr9819	transcription start site region 9819	890 bp upstream
Tssr9820	transcription start site region 9820	1942 bp upstream
Tssr14792	transcription start site region 14792	1389 bp downstream