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rs46416360 SNP Detail
Summary
  • ID
    rs46416360
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr1:165592787 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          CCTCAGTACC CATCTTGACA GCTTGCACGC ACATGTGATC
    CTACACTGGC TCAACGGCTT GCACACACTT GCACACACGT GTGATCTTGC ACTGGCCAGG
    Y
    GGCTAGCTCC CTGGCCTGCC AGCCAAGCGG AGTCAGTGAG CTTCAGACCG CAGGGAGAGA
    GAGCCTGGCT CAAAAAGCCA GTTGGATGGC TCCAGCTTC                       
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
A/J
DBA/2J
ss146006577 ENSMUSSNP684013 ENSEMBL ENSEMBL_Sanger f SNP T C
SNP Consensus Information
SNP Consensus Type
A/J
DBA/2J
rs46416360 SNP T C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:165592787 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi955 CpG island 955 882 bp distal
Creg1 cellular repressor of E1A-stimulated genes 1 within coordinates
Gm70530 predicted gene, 70530 within coordinates
Rr28876 regulatory region 28876 within coordinates
Rr396502 regulatory region 396502 1379 bp downstream
Tssr9817 transcription start site region 9817 1434 bp downstream
Tssr9818 transcription start site region 9818 628 bp upstream
Tssr9819 transcription start site region 9819 890 bp upstream
Tssr9820 transcription start site region 9820 1942 bp upstream
Tssr14792 transcription start site region 14792 1389 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory