rs46416745 SNP Detail

Summary

• ID
  rs46416745
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:13850403 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAGCTCAT GAAGCTGAAA
  AGCTTCTGTA AGGCAAAGGA CACTGCCATA GGACAAAACA GCAACCTACA GACTCAGCAA
  AACGTTACCA ACACTACATC CAGTGGAGTT TGTTTTAATA GTCATTTATT ATAATATTTA
  AGGCTATGTT TTAGTTAGTT CCATCTAGTA TTTTATAGGA AATGTCTTTA AAAATTGTAT
  Y
  ATTCTGAATT ATTTTCAAAT ATAGTCATGC CCCATTTTTC TGGATTATTT GAACAATCTT
  TTAGTAACTT TAGCCTGCCA GCCCAAATCA AGAAATTACT AGGAAAGAGT TCCAAGCTGT
  GTATCTGTTT TATCGGCACA AAGCTTTACC TCTAAAATAG TCCTTTCAGA AGCTATTTAC
  ACTACATAGT TATAAAACGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61750110	NES17677618	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46416745					SNP	C	C	C	C	C	T	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61750110	NES17677618	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:13850403 () rs orientation: forward

Symbol	Name	Function Class
Lyst	lysosomal trafficking regulator	within coordinates
Rr270836	regulatory region 270836	403 bp distal
Rr275153	regulatory region 275153	803 bp distal
Rr282634	regulatory region 282634	1998 bp proximal