rs46417236 SNP Detail

Summary

• ID
  rs46417236
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:59840180 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCTC CATGATGGCC TATGTTTTTG
  Y
  TCACTCCATA TACGCTTGGG TCATT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss132243852	ENSMUSSNP309267	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46417236					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:59840180 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2971	CpG island 2971	674 bp distal
Med9	mediator complex subunit 9	within coordinates
Med9os	mediator complex subunit 9, opposite strand	1207 bp upstream
Rr448290	regulatory region 448290	1220 bp distal
Rr448291	regulatory region 448291	640 bp distal
Tssr101871	transcription start site region 101871	1093 bp downstream
Tssr108257	transcription start site region 108257	1253 bp upstream
Tssr108258	transcription start site region 108258	1191 bp upstream
Tssr108259	transcription start site region 108259	1173 bp upstream