rs46417887 SNP Detail

Summary

• ID
  rs46417887
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:16194710 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTATAACCA TTTGGACAAC
  ATAGGGTGCA GTCAATGACT GTTACCTGTA AACATACTAT AGATGTGCTT TTCAATAGCA
  AGATCCCTGG TATGGGAATG TATGTTTTAC TTTGGCCTCT TCACTCAAGA TTATTAGATA
  AAGCTGAGAA AAACATGAGA CTGAAGGGAC TGTAAGGGCT GTGGTACTCT GACCTTTTAA
  R
  TGAATTTGTC CTGTGTTCAG GTGGGAAGTA TTTTGGTTTT GTGAAGTTGA TTTGAATTGC
  ATTGGCTAAG CAGCAGATAT TCACTCTCAA GCTCCCTGCA ATCTGTCCCA ATAAGTGAAA
  TTGATTTTAT TTTTATAAGT GTCACCCAAG AGTGCTTCCC AAAGTTAGCA TATTTATTGC
  ATGACTGGCC CCATACCATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52620134	NES15517413	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46417887					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52620134	NES15517413	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:16194710 () rs orientation: forward

Symbol	Name	Function Class
Inhba	inhibin beta-A	within coordinates
Tssr118444	transcription start site region 118444	1947 bp downstream
Tssr118445	transcription start site region 118445	190 bp downstream
Tssr118446	transcription start site region 118446	1548 bp upstream