rs46417945 SNP Detail

Summary

• ID
  rs46417945
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:85879708 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C TGGAGCCTTC TTAGAAAGGG AACATGGAGA GGCTCCTCTG
  TGTGACCACC AGGAGAAAGT TGGGTCTGTG GAATTGGAGG GCAGAAAATG GGATAAAAGC
  A
  AAAAAAAAAA AAAAAAAAAA AAGTCGGTAA GCGTATTCCG AGTAAGACAT TCCGGAAGCT
  TAAAATTAAC TTTATGCCTG CCTGCCTGCC TGCCACGGGG C                    
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss135442602	ENSMUSSNP6940402	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs46417945					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:85879708 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13322	CpG island 13322	493 bp distal
Rr579285	regulatory region 579285	1282 bp distal
Rr579286	regulatory region 579286	26 bp distal
Rr579287	regulatory region 579287	1052 bp proximal
Sh3d19	SH3 domain protein D19	within coordinates
Tssr29770	transcription start site region 29770	1226 bp downstream
Tssr29771	transcription start site region 29771	1165 bp downstream