rs46419542 SNP Detail

Summary

• ID
  rs46419542
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:174315237 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCTAAAGT TCTCATTGGA
  TGTGGCTGAG CCTGGCGGCG TTTGCCAGAG TACGGTTTTG TGGTGTGGTC TTAGAGAGTT
  AGTCCCACCT CTTCAATCTA AGCAGTGGGG TGGCGGGACA GGGGTGGTTT CAATCAGCAC
  CCGTGCCCTT GCCAGCCCAG GGTTGGTTAC CCTTGGTGGA ACAGGCCACC CAGACAGGGC
  Y
  GGACCAATTG CTCTACGGTC ATAGGTCATC TCCATCACCA TTTCTCAGTG ATGCCCACGC
  CCTCCTGTGC CTCCACAACT TCCTGTTACA TATTCCTCAG CAATTACCAC TCTGGAGTCA
  TCTTGTTTAT CTGTTAGCTC CCATTGTAAG TCATCCCCCA GAAAGCCAGC CCTGGCCTGT
  CTCCATCATG GCACTCAGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148343962	ENSMUSSNP700	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss320627902	CHEV_2_174298945	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46419542					SNP	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174315237 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12865	CpG island 12865	within coordinates
Gm38546	predicted gene, 38546	within coordinates
Prelid3b	PRELI domain containing 3B	503 bp upstream
Rr397557	regulatory region 397557	266 bp downstream
Rr572133	regulatory region 572133	557 bp distal
Rr572134	regulatory region 572134	821 bp distal
Rr572135	regulatory region 572135	454 bp distal
Rr572136	regulatory region 572136	426 bp distal
Rr572137	regulatory region 572137	249 bp distal
Rr572138	regulatory region 572138	within coordinates
Tssr28035	transcription start site region 28035	508 bp upstream
Tssr28036	transcription start site region 28036	425 bp upstream