rs46419893 SNP Detail

Summary

• ID
  rs46419893
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127431290 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTTCCTTATG CCTGGATATG TTATCACAGA AACAAGAAGT
  AAATTTTTGT TTTTTGAGAC ATATCTCAAC AGCTTGCCCA GGCTGCTGTT GCAATCACTC
  W
  CTAGCCCGGT GCTGGGTTTG AACTTCCCAT CCTCCTGTTC CAGTCTCTCT CATAGCAGGG
  TCTGTGAGCC TGTACTAACA GGTTACTTCC TGTTCATTG                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147535391	ENSMUSSNP4678576	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs46419893					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127431290 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12227	CpG island 12227	1346 bp distal
Mrps5	mitochondrial ribosomal protein S5	Intron
Rr564565	regulatory region 564565	1260 bp distal
Rr564566	regulatory region 564566	1789 bp distal
Rr564567	regulatory region 564567	777 bp distal
Rr564568	regulatory region 564568	704 bp proximal
Tssr20026	transcription start site region 20026	1940 bp downstream
Tssr20027	transcription start site region 20027	951 bp upstream
Tssr20028	transcription start site region 20028	1372 bp upstream