rs46420589 SNP Detail

Summary

• ID
  rs46420589
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:55252988 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAATCACGA ATCACATGCT
  TCTGTCCCCG CCCACCTTTA CGCCTTAAGA ACGCCTCTGC GTTTGACACA TTCAGGGAGT
  TTCTTTATTT CATTGGCTAG GTGAGGTCCC GCCTCTCCGA TTAGCGGAAA TGAAAGATCT
  CTTACTTCCA TTGGCTGAAA TTTGCAAACT GTGATTGTCT ATCAAAACTA TGAACTCACG
  Y
  TAGCTCCTAG GAAGTTCGGG CCCGGAAAGG GTGGGCTTTG CGAAGATGGC GGCTCCGGTG
  AGTTCTGTCT CCTTGCTTCT TCCCGGAAAG GAAGGAATCT GTGAAAGTTT CCTTTCGCCT
  CCACGGATCG AGGCAAACCG TTGGCACCAT GGATGATGAG AGTGATGAGA GTTGTCTCAG
  GGATGCGCTC ACTCTGACAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52722750	NES15566827	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	C	C	T		C	C	T	T		T
ss139575823	ENSMUSSNP588516	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
ss324641574	CHEV_14_55634368	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs46420589					SNP	T	T	T	T	C	T	T	C	C	T	T	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52722750	NES15566827	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:55252988 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6482	CpG island 6482	within coordinates
Gm63347	predicted gene, 63347	within coordinates
Ngdn	neuroguidin, EIF4E binding protein	within coordinates
Rr369830	regulatory region 369830	337 bp downstream
Rr369831	regulatory region 369831	within coordinates
Rr404108	regulatory region 404108	1109 bp downstream
Rr492392	regulatory region 492392	67 bp distal
Rr492393	regulatory region 492393	364 bp distal
Rr492394	regulatory region 492394	within coordinates
Rr492395	regulatory region 492395	260 bp proximal
Rr492396	regulatory region 492396	627 bp proximal
Tssr125743	transcription start site region 125743	within coordinates