rs46421002 SNP Detail

Summary

• ID
  rs46421002
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46039430 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAATGTGT GTGTCCTCTC
  CCATTGAGGT GCAACCTGGC AGTTCAGCTA GAGGAAGGGG AGGGTTCCAA TGGCAGGCAG
  CTCAGTCAGA GATAGCCCTG ACATAGTTGT TAGGGGAGCC ACATGACGAC AAAGCTGCAC
  GTCTGCTATA AATGTGTAGG GCACCTATGC TGGCCCATGC ATGTTCTTTG TTAGTGGTTC
  A
  GTCTCTGTTA GCTTCCATGG GCTCAGGTTA GTTGACTCTG TAGGTCTTCT TGTGGTGTCC
  TTGACTGCTC CCGCACACTC AATCCTATCC CGCACTCTTC CACAGAACTC CCAAAGCTCT
  GCCTGATGTT TGGCTGTGGG TCTCTGCGTT TGTCTCAATG CACTGCTGGA TGAAACCTCT
  CAGGAGACAG TTATGCTAGG                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss136423337	ENSMUSSNP598595	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs46421002					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46039430 () rs orientation: forward

Symbol	Name	Function Class
Rr678056	regulatory region 678056	1406 bp distal
Rr678057	regulatory region 678057	448 bp distal
Sik3	SIK family kinase 3	within coordinates
Tssr84829	transcription start site region 84829	895 bp downstream