rs46422882 SNP Detail

Summary

• ID
  rs46422882
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172117674 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTAAAGACT TCTATCATGG AAATAGTATT CAATATACAG
  TGGCTATAAA ATGACTAGAT CAAAGAAATC CCAGGGCACA GAGCATTCCT AACAGGTAGA
  K
  CCACAGAGGT AGCATGTAGC CATCATATGC TGGAAGGAGG TATACCAGGT ACAGGGGAGA
  CCTTAATGTT TGCATTTTTT TTTTAACTTT TAAGCTTTC                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss120008654	PARCsnp_1.18405	PARC_SEQ	INBRED	f	SNP		G	T
ss120011739	PARCsnp_1.08137	PARC_SEQ	INBRED	f	SNP		G	T
ss146186753	ENSMUSSNP5820719	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		T
ss320123912	CHEV_1_174220238	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs46422882					SNP	T	G	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172117674 () rs orientation: forward

Symbol	Name	Function Class
Atp1a2	ATPase, Na+/K+ transporting, alpha 2 polypeptide	within coordinates
Gm39704	predicted gene, 39704	813 bp upstream
Gm57554	predicted gene, 57554	within coordinates
Tssr15205	transcription start site region 15205	709 bp upstream
Tssr15206	transcription start site region 15206	1216 bp downstream