rs46423530 SNP Detail

Summary

• ID
  rs46423530
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:10991333 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCGTCACCT GGAGACAAAT
  GCACTTTGCT AGTATGGACT TGGGTTACAT TTTCCATGCA ATATATATTG CGGCAGCCTG
  TAGCTGGAGG ATTTAGTACA CCTTCCCCTT ACTTCTCTCA GAGTGTCCCA GAAAAAACAT
  GGCCTCTCAC ATTCCTGCAG ACCAGATTTC TATCACATTC AGCTCTCTAT TCCCATAAGC
  R
  TGGCAACAAT ATATCATCCT GGAGATTTAG GCTCACATAC TCATTCAAAA CACAGAACCA
  TTCTTAAAAC CACTTATTGA AAGGGAACAA TCCAGAGCCC TGAGTTAAAT ATAAGTCCTG
  TCATCATAGG TAATTATAAG TATTATTCAG TCAGCTCAAC CAGTTCGCCC TGAGCACCAC
  TGACACAAAT GTATTAGGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61741561	NES17678369	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	A	G	G	G	A		A	A	G	A		G
ss324260881	CHEV_13_10940543	CHEVERUD	SCREENING_POP	f	SNP										A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs46423530					SNP	G	G	A	G	A	G	G	G	A	A	A	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61741561	NES17678369	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:10991333 () rs orientation: forward

Symbol	Name	Function Class
Rr270346	regulatory region 270346	668 bp proximal
Rr278201	regulatory region 278201	743 bp proximal