rs46423941 SNP Detail

Summary

• ID
  rs46423941
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:91153835 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTGCTTGA GAGCTGCAGA
  ATACACAGAT TCAAACTGCC TCTGTGTTTG TTTCTGTTTG TCACCACCAA ATCCTTACCC
  ACCTAGCTTC AAGGACCCTC ATTCCAGGGA CCCCCCGTAC CCGACTGGGG TGGTCCGTGG
  ATTGAAAACC TCCAGCATCC TTTCAGTCCA TTAAGACCTT GCATAGTCAG AGTCATCACT
  Y
  TGTTTGGATG TAGCACATAG TAGGTGCGCA AGGAAAAGTG TAGTTGAGAA AGGTCTGTGA
  GCTCTAGCCC CACTGTCACA TCCCTCACGT GGCATGACGA CCTTCTCAAA TTCATGTTCA
  GTGTGACAGC TGTGGAGTTA ATGAGAGCTG CAGATCAGCA GCCGGGACGT GCCAAGGTGC
  TGCCTGGACA GACAGAGTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60507289	NES16338781	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46423941					SNP	C	C	C	C	T	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60507289	NES16338781	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:91153835 () rs orientation: forward

Symbol	Name	Function Class
Gm60057	predicted gene, 60057	161 bp downstream
Rr404956	regulatory region 404956	1534 bp upstream
Rr519336	regulatory region 519336	1677 bp distal
Rr519337	regulatory region 519337	1291 bp distal
Rr519338	regulatory region 519338	1551 bp proximal
Rr519339	regulatory region 519339	1672 bp proximal
Tssr4955	transcription start site region 4955	1578 bp upstream
Tssr142077	transcription start site region 142077	1695 bp upstream