rs46424295 SNP Detail

Summary

• ID
  rs46424295
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:76805989 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCGC GCTCCTTCCC GCGCCTTGTC
  Y
  GGTTCCCGGG TCCCCAGCGC AGAGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148699795	ENSMUSSNP4495022	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss321573604	CHEV_5_77087167	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46424295					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:76805989 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
A730089K16Rik	RIKEN cDNA A730089K16 gene			within coordinates
Cpgi15996	CpG island 15996			within coordinates
Cracd	capping protein inhibiting regulator of actin			Coding-NonSynonymous
				Intron
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Gm10430	predicted gene 10430			within coordinates
Rr613608	regulatory region 613608			within coordinates
Rr613609	regulatory region 613609			199 bp proximal
Tssr46728	transcription start site region 46728			473 bp downstream
Tssr46729	transcription start site region 46729			420 bp downstream
Tssr46730	transcription start site region 46730			410 bp downstream
Tssr46731	transcription start site region 46731			378 bp downstream
Tssr51429	transcription start site region 51429			168 bp downstream
Tssr51430	transcription start site region 51430			195 bp downstream
Tssr51431	transcription start site region 51431			221 bp downstream