rs46424519 SNP Detail

Summary

• ID
  rs46424519
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:148895204 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCAAC GGGTGCACTT TTCTTCTTCT
  R
  TAGTGCTTCC TAAAATGTTG TTAAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss144698580	ENSMUSSNP556292	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A
ss321719771	CHEV_5_149769970	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46424519					SNP	A	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:148895204 () rs orientation: forward

Symbol	Name	Function Class
1810059H22Rik	RIKEN cDNA 1810059H22 gene	within coordinates
Cpgi17084	CpG island 17084	753 bp proximal
Gm15406	predicted gene 15406	within coordinates
Gm15409	predicted gene 15409	within coordinates
Gm52833	predicted gene, 52833	within coordinates
Rr111639	regulatory region 111639	within coordinates
Rr124806	regulatory region 124806	196 bp proximal
Rr378799	regulatory region 378799	242 bp downstream
Rr378800	regulatory region 378800	993 bp upstream
Tssr49867	transcription start site region 49867	869 bp upstream
Tssr49868	transcription start site region 49868	925 bp upstream
Tssr49869	transcription start site region 49869	1397 bp upstream
Tssr54596	transcription start site region 54596	886 bp downstream
Tssr54597	transcription start site region 54597	1060 bp downstream
Tssr54598	transcription start site region 54598	1165 bp downstream
Tssr54599	transcription start site region 54599	1581 bp downstream