rs46425128 SNP Detail

Summary

• ID
  rs46425128
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:130489666 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTGA AATTGCAGAG TAGCACACAC
  R
  CCATTTAAAG CACCACTGCA GGAAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61080638	NES16590360	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	A	A	G	A	G	G	G		A	G	G	A		G
ss135897845	ENSMUSSNP6543753	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							G
ss320966032	CHEV_3_130398935	CHEVERUD	SCREENING_POP	f	SNP												G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs46425128					SNP	G	G	A	G	A	A	G	A	G	G	G	G	A	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61080638	NES16590360	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130489666 () rs orientation: forward

Symbol	Name	Function Class
Gm65113	predicted gene, 65113	1419 bp downstream
Ostc	oligosaccharyltransferase complex subunit (non-catalytic)	mRNA-UTR
Rr398016	regulatory region 398016	1678 bp downstream
Rr585194	regulatory region 585194	1664 bp distal
Rr585195	regulatory region 585195	1783 bp distal
Rr585196	regulatory region 585196	948 bp distal